Software
PSAIA - PSAIA is a software tool that integrates several algorithms for protein interactions and structure geometry analysis of protein complexes into a single application.
RiNALMo - RiboNucleic Acid Language Model (RiNALMo) is an RNA language model that achieves state-of-the-art results on several downstream tasks.
GNNome - GNNome is a framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
HERRO - HERRO (Haplotype-aware ERRor cOrrection) is a highly accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14 reads.
Rockfish - Rockfish is the deep learning based tool for detecting 5mC DNA base modifications.
Racon - Racon is the state-of-the-art tool for the consensus and/or polishing of genome assemblies. SPOA its core module is a SIMD accelerated multiple sequence alignment tool.
Raven - Raven is a straightforward, fast, and memory-efficient de novo assembler optimized for work with Nanopore and Pacbio CLR sequenced data.
Edlib - Edlib is a lightweight, super-fast library for sequence alignment using edit (Levenshtein) distance.
Graphmap - Graphmap/Graphmap2 is a fast and sensitive tool for the alignment of DNA or RNA long reads to the reference genome.
SW# - SW# is a GPU accelerated tool for the calculation of the exact alignment of long sequences.
Spoa - Spoa (SIMD POA) is a C++ implementation of the partial order alignment (POA) algorithm which is used to generate consensus sequences.